Publications

Found 251 results
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2023
Nelson AT, Cicardi ME, Markandaiah SS, Han J, Philp N, Welebob E, Haeusler AR, Pasinelli P, Manfredi G, Kawamata H et al..  2023.  Glucose Hypometabolism Prompts RAN Translation and Exacerbates C9orf72-related ALS/FTD Phenotypes.. bioRxiv.
Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, Dong H-W, Ghosh SS, Gillis J, Hertzano R, Haynor DR, Hof PR et al..  2023.  A guide to the BRAIN Initiative Cell Census Network data ecosystem.. PLoS Biol. 21(6):e3002133.
Nemirovsky IE, Popiel NJM, Rudas J, Caius M, Naci L, Schiff ND, Owen AM, Soddu A.  2023.  An implementation of integrated information theory in resting-state fMRI.. Commun Biol. 6(1):692.
Nemirovsky IE, Popiel NJM, Rudas J, Caius M, Naci L, Schiff ND, Owen AM, Soddu A.  2023.  An implementation of integrated information theory in resting-state fMRI.. Commun Biol. 6(1):692.
Witsch J, Rutrick SB, Lansdale KN, Seitz A, Kamel H, Parikh NS, Segal AZ, Mir SA, Murthy SB, Niogi SN et al..  2023.  Influenza-Like Illness as a Short-Term Risk Factor for Arterial Dissection.. Stroke. 54(3):e66-e68.
Gamlin CR, Schneider-Mizell CM, Mallory M, Elabbady L, Gouwens N, Williams G, Mukora A, Dalley R, Bodor A, Brittain D et al..  2023.  Integrating EM and Patch-seq data: Synaptic connectivity and target specificity of predicted Sst transcriptomic types.. bioRxiv.
Gamlin CR, Schneider-Mizell CM, Mallory M, Elabbady L, Gouwens N, Williams G, Mukora A, Dalley R, Bodor A, Brittain D et al..  2023.  Integrating EM and Patch-seq data: Synaptic connectivity and target specificity of predicted Sst transcriptomic types.. bioRxiv.
Yang L, Han Y, Zhou T, Lacko LA, Saeed M, Tan C, Danziger R, Zhu J, Zhao Z, Cahir C et al..  2023.  Isogenic human trophectoderm cells demonstrate the role of NDUFA4 and associated variants in ZIKV infection.. iScience. 26(7):107001.
Yang L, Han Y, Zhou T, Lacko LA, Saeed M, Tan C, Danziger R, Zhu J, Zhao Z, Cahir C et al..  2023.  Isogenic human trophectoderm cells demonstrate the role of NDUFA4 and associated variants in ZIKV infection.. iScience. 26(7):107001.
Kauwe G, Pareja-Navarro KA, Yao L, Chen JH, Wong I, Saloner R, Cifuentes H, Nana AL, Shah S, Li Y et al..  2023.  KIBRA repairs synaptic plasticity and promotes resilience to tauopathy-related memory loss.. bioRxiv.
Seitz A, Parauda SC, Omran SSalehi, Schweitzer AD, Liberman AL, Murthy SB, Merkler AE, Navi BB, Iadecola C, Kamel H et al..  2023.  Long-term risk of seizure after posterior reversible encephalopathy syndrome.. Ann Clin Transl Neurol.
Pine AR, Cirigliano SM, Singhania R, Nicholson J, Da Silva B, Leslie CS, Fine HA.  2023.  Microenvironment-driven dynamic chromatin changes in glioblastoma recapitulate early neural development at single-cell resolution.. Cancer Res.
Panconesi R, Carvalho MFlores, Eden J, Fazi M, Ansari F, Mancina L, Navari N, Da Silva RXavier Sou, Dondossola D, Borrego LBautista et al..  2023.  Mitochondrial injury during normothermic regional perfusion (NRP) and hypothermic oxygenated perfusion (HOPE) in a rodent model of DCD liver transplantation.. EBioMedicine. 98:104861.
Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, J Bae A, Bodor AL et al..  2023.  NEURD: automated proofreading and feature extraction for connectomics.. bioRxiv.
Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu S-C, McKellar CE, Lin A, Costa M, Eichler K, Yin Y et al..  2023.  Neuronal wiring diagram of an adult brain.. bioRxiv.
Crane-Smith Z, De Castro SCP, Nikolopoulou E, Wolujewicz P, Smedley D, Lei Y, Mather E, Santos C, Hopkinson M, Pitsillides AA et al..  2023.  A non-coding insertional mutation of Grhl2 causes gene over-expression and multiple structural anomalies including cleft palate, spina bifida and encephalocele.. Hum Mol Genet. 32(17):2681-2692.
Naguib S, Backstrom JR, Artis E, Ghose P, Stahl A, Hardin R, Haider AA, Ang J, Calkins DJ, Rex TS.  2023.  NRF2/ARE mediated antioxidant response to glaucoma: role of glia and retinal ganglion cells.. Acta Neuropathol Commun. 11(1):171.
Cakir Z, Lord SJ, Zhou Y, Jang GM, Polacco BJ, Eckhardt M, Jimenez-Morales D, Newton BW, Orr AL, Johnson JR et al..  2023.  Quantitative proteomic analysis reveals apoE4-dependent phosphorylation of the actin-regulating protein VASP.. Mol Cell Proteomics. :100541.
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJune, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K et al..  2023.  Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy.. bioRxiv.
Lopez-Lee C, Kodama L, Fan L, Wong MYing, Foxe NR, Jiaz L, Yu F, Ye P, Zhu J, Norman K et al..  2023.  Sex Chromosomes and Gonads Shape the Sex-Biased Transcriptomic Landscape in Tlr7-Mediated Demyelination During Aging.. bioRxiv.
Joglekar A, Hu W, Zhang B, Narykov O, Diekhans M, Balacco J, Ndhlovu LC, Milner TA, Fedrigo O, Jarvis ED et al..  2023.  Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development.. bioRxiv.
Joglekar A, Hu W, Zhang B, Narykov O, Diekhans M, Balacco J, Ndhlovu LC, Milner TA, Fedrigo O, Jarvis ED et al..  2023.  Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development.. bioRxiv.
Chiu Y-T, Deutch AY, Wang W, Schmitz GP, Huang KLu, D Kocak D, Llorach P, Bowyer K, Liu B, Sciaky N et al..  2023.  A suite of engineered mice for interrogating psychedelic drug actions.. bioRxiv.
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al..  2023.  Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. bioRxiv.
Bennett NK, Lee M, Orr AL, Nakamura K.  2023.  Systems-level analyses dissociate genetic regulators of reactive oxygen species and energy production.. bioRxiv.