Publications

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2023

Kauwe G, Pareja-Navarro KA, Yao L, Chen JH, Wong I, Saloner R, Cifuentes H, Nana AL, Shah S, Li Y et al.. 2023. KIBRA repairs synaptic plasticity and promotes resilience to tauopathy-related memory loss.. bioRxiv.

Seitz A, Parauda SC, Omran SSalehi, Schweitzer AD, Liberman AL, Murthy SB, Merkler AE, Navi BB, Iadecola C, Kamel H et al.. 2023. Long-term risk of seizure after posterior reversible encephalopathy syndrome.. Ann Clin Transl Neurol.

Pine AR, Cirigliano SM, Singhania R, Nicholson J, Da Silva B, Leslie CS, Fine HA. 2023. Microenvironment-driven dynamic chromatin changes in glioblastoma recapitulate early neural development at single-cell resolution.. Cancer Res.

Panconesi R, Carvalho MFlores, Eden J, Fazi M, Ansari F, Mancina L, Navari N, Da Silva RXavier Sou, Dondossola D, Borrego LBautista et al.. 2023. Mitochondrial injury during normothermic regional perfusion (NRP) and hypothermic oxygenated perfusion (HOPE) in a rodent model of DCD liver transplantation.. EBioMedicine. 98:104861.

Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, J Bae A, Bodor AL et al.. 2023. NEURD: automated proofreading and feature extraction for connectomics.. bioRxiv.

Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu S-C, McKellar CE, Lin A, Costa M, Eichler K, Yin Y et al.. 2023. Neuronal wiring diagram of an adult brain.. bioRxiv.

Crane-Smith Z, De Castro SCP, Nikolopoulou E, Wolujewicz P, Smedley D, Lei Y, Mather E, Santos C, Hopkinson M, Pitsillides AA et al.. 2023. A non-coding insertional mutation of Grhl2 causes gene over-expression and multiple structural anomalies including cleft palate, spina bifida and encephalocele.. Hum Mol Genet. 32(17):2681-2692.

Naguib S, Backstrom JR, Artis E, Ghose P, Stahl A, Hardin R, Haider AA, Ang J, Calkins DJ, Rex TS. 2023. NRF2/ARE mediated antioxidant response to glaucoma: role of glia and retinal ganglion cells.. Acta Neuropathol Commun. 11(1):171.

Cakir Z, Lord SJ, Zhou Y, Jang GM, Polacco BJ, Eckhardt M, Jimenez-Morales D, Newton BW, Orr AL, Johnson JR et al.. 2023. Quantitative proteomic analysis reveals apoE4-dependent phosphorylation of the actin-regulating protein VASP.. Mol Cell Proteomics. :100541.

Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJune, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K et al.. 2023. Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy.. bioRxiv.

Lopez-Lee C, Kodama L, Fan L, Wong MYing, Foxe NR, Jiaz L, Yu F, Ye P, Zhu J, Norman K et al.. 2023. Sex Chromosomes and Gonads Shape the Sex-Biased Transcriptomic Landscape in Tlr7-Mediated Demyelination During Aging.. bioRxiv.

Joglekar A, Hu W, Zhang B, Narykov O, Diekhans M, Balacco J, Ndhlovu LC, Milner TA, Fedrigo O, Jarvis ED et al.. 2023. Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development.. bioRxiv.

Chiu Y-T, Deutch AY, Wang W, Schmitz GP, Huang KLu, D Kocak D, Llorach P, Bowyer K, Liu B, Sciaky N et al.. 2023. A suite of engineered mice for interrogating psychedelic drug actions.. bioRxiv.

Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al.. 2023. Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. bioRxiv.

Bennett NK, Lee M, Orr AL, Nakamura K. 2023. Systems-level analyses dissociate genetic regulators of reactive oxygen species and energy production.. bioRxiv.

Evering TH, Marston JL, Gan L, Nixon DF. 2023. Transposable elements and Alzheimer's disease pathogenesis.. Trends Neurosci. 46(3):170-172.

Nair RSathish, Kumar S, Das S, Singh SKumar, Srivastava P, Sondarva G, Rao A, Sinha SC, Xiong R, Bloem L et al.. 2023. TrkA expression directs the anti-neoplastic activity of MLK3 inhibitors in triple-negative breast cancer.. Oncogene.

Ruiz-Uribe NE, Bracko O, Swallow M, Omurzakov A, Dash S, Uchida H, Xiang D, Haft-Javaherian M, Falkenhain K, Lamont ME et al.. 2023. Vascular oxidative stress causes neutrophil arrest in brain capillaries, leading to decreased cerebral blood flow and contributing to memory impairment in a mouse model of Alzheimerâ€™s disease.. bioRxiv.

2022

Allen M, Huang BS, Notaras MJ, Lodhi A, Barrio-Alonso E, Lituma PJ, Wolujewicz P, Witztum J, Longo F, Chen M et al.. 2022. Astrocytes derived from ASD individuals alter behavior and destabilize neuronal activity through aberrant Ca2+ signaling.. Mol Psychiatry.

Kim N, O'Sullivan J, Olafson E, Caliendo E, Nowak S, Voss HU, Lowder R, Watson WD, Ivanidze J, Fins JJ et al.. 2022. Cognitive-Motor Dissociation Following Pediatric Brain Injury: What About the Children? Neurol Clin Pract. 12(3):248-257.

Dräger NM, Sattler SM, Huang CTzu-Ling, Teter OM, Leng K, Hashemi SHadi, Hong J, Aviles G, Clelland CD, Zhan L et al.. 2022. A CRISPRi/a platform in human iPSC-derived microglia uncovers regulators of disease states.. Nat Neurosci.

Chora AFerreira, Pedroso D, Kyriakou E, Pejanovic N, Colaço H, Gozzelino R, Barros A, Willmann K, Velho T, Moita CF et al.. 2022. DNA damage independent inhibition of NF-κB transcription by anthracyclines.. Elife. 11