Publications

Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA, Tezak Z, Lababidi S et al..  2019.  Author Correction: Best practices for benchmarking germline small-variant calls in human genomes.. Nat Biotechnol.

Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA, Tezak Z, Lababidi S et al..  2019.  Best practices for benchmarking germline small-variant calls in human genomes.. Nat Biotechnol.

Shamarina D, Stoyantcheva I, Mason CE, Bibby K, Elhaik E.  2017.  Communicating the promise, risks, and ethics of large-scale, open space microbiome and metagenome research.. Microbiome. 5(1):132.

Maduro V, Pusey BN, Cherukuri PF, Atkins P, Souich Cdu, Rupps R, Limbos M, Adams DR, Bhatt SS, Eydoux P et al..  2016.  Complex translocation disrupting TCF4 and altering TCF4 isoform expression segregates as mild autosomal dominant intellectual disability.. Orphanet J Rare Dis. 11(1):62.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S et al..  2017.  Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.. Genome Biol. 18(1):182.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S et al..  2019.  Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.. Genome Biol. 20(1):72.

Backlund PS, Urbanski HF, Doll MA, Hein DW, Bozinoski M, Mason CE, Coon SL, Klein DC.  2017.  Daily Rhythm in Plasma N-acetyltryptamine.. J Biol Rhythms. 32(3):195-211.

Li S, Garrett-Bakelman FE, Chung SS, Sanders MA, Hricik T, Rapaport F, Patel J, Dillon R, Vijay P, Brown AL et al..  2016.  Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia.. Nat Med. 22(7):792-9.

Lichinchi G, Gao S, Saletore Y, Gonzalez GMichelle, Bansal V, Wang Y, Mason CE, Rana TM.  2016.  Dynamics of the human and viral m(6)A RNA methylomes during HIV-1 infection of T cells.. Nat Microbiol. 1:16011.

Goldman SL, Hassan C, Khunte M, Soldatenko A, Jong Y, Afshinnekoo E, Mason CE.  2019.  Epigenetic Modifications in Acute Myeloid Leukemia: Prognosis, Treatment, and Heterogeneity.. Front Genet. 10:133.

Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N et al..  2016.  Extensive sequencing of seven human genomes to characterize benchmark reference materials.. Sci Data. 3:160025.

Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J et al..  2016.  Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius.. Nat Commun. 7:10164.

M Ross E, Mason CE, Finnell RH.  2017.  Genomic approaches to the assessment of human spina bifida risk.. Birth Defects Res. 109(2):120-128.

Afshinnekoo E, Ahsanuddin S, Mason CE.  2016.  Globalizing and crowdsourcing biomedical research.. Br Med Bull. 120(1):27-33.

Goldman SL, MacKay M, Afshinnekoo E, Melnick AM, Wu S, Mason CE.  2019.  The Impact of Heterogeneity on Single-Cell Sequencing.. Front Genet. 10:8.

Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, Zhang Y, Ye K, Jun G, Fritz MHsi-Yang et al..  2015.  An integrated map of structural variation in 2,504 human genomes.. Nature. 526(7571):75-81.

Jain D, M Puno R, Meydan C, Lailler N, Mason CE, Lima CD, Anderson KV, Keeney S.  2018.  ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2.. Elife. 7

Yao Y, Norris EH, Mason CE, Strickland S.  2016.  Laminin regulates PDGFRβ(+) cell stemness and muscle development.. Nat Commun. 7:11415.

Tessler M, Neumann JS, Afshinnekoo E, Pineda M, Hersch R, Velho LFelipe M, Segovia BT, Lansac-Toha FA, Lemke M, DeSalle R et al..  2017.  Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing.. Sci Rep. 7(1):6589.

Agirre X, Meydan C, Jiang Y, Garate L, Doane AS, Li Z, Verma A, Paiva B, Martín-Subero JI, Elemento O et al..  2019.  Long non-coding RNAs discriminate the stages and gene regulatory states of human humoral immune response.. Nat Commun. 10(1):821.

O'Hara NB, Reed HJ, Afshinnekoo E, Harvin D, Caplan N, Rosen G, Frye B, Woloszynek S, Ounit R, Levy S et al..  2017.  Metagenomic characterization of ambulances across the USA.. Microbiome. 5(1):125.

Imam H, Khan M, Gokhale NS, McIntyre ABR, Kim G-W, Jang JYoung, Kim S-J, Mason CE, Horner SM, Siddiqui A.  2018.  -methyladenosine modification of hepatitis B virus RNA differentially regulates the viral life cycle.. Proc Natl Acad Sci U S A.

Shaaban H, Westfall DA, Mohammad R, Danko D, Bezdan D, Afshinnekoo E, Segata N, Mason CE.  2018.  The Microbe Directory: An annotated, searchable inventory of microbes' characteristics.. Gates Open Res. 2:3.

Singh NK, Bezdan D, Sielaff AChecinska, Wheeler K, Mason CE, Venkateswaran K.  2018.  Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains.. BMC Microbiol. 18(1):175.

Vu LP, Pickering BF, Cheng Y, Zaccara S, Nguyen D, Minuesa G, Chou T, Chow A, Saletore Y, MacKay M et al..  2017.  The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells.. Nat Med. 23(11):1369-1376.