Publications

Found 414 results
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2023
Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, J Bae A, Bodor AL et al..  2023.  NEURD: automated proofreading and feature extraction for connectomics.. bioRxiv.
Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, J Bae A, Bodor AL et al..  2023.  NEURD: automated proofreading and feature extraction for connectomics.. bioRxiv.
Crane-Smith Z, De Castro SCP, Nikolopoulou E, Wolujewicz P, Smedley D, Lei Y, Mather E, Santos C, Hopkinson M, Pitsillides AA et al..  2023.  A non-coding insertional mutation of Grhl2 causes gene over-expression and multiple structural anomalies including cleft palate, spina bifida and encephalocele.. Hum Mol Genet. 32(17):2681-2692.
Naguib S, Backstrom JR, Artis E, Ghose P, Stahl A, Hardin R, Haider AA, Ang J, Calkins DJ, Rex TS.  2023.  NRF2/ARE mediated antioxidant response to glaucoma: role of glia and retinal ganglion cells.. Acta Neuropathol Commun. 11(1):171.
Li YH, Cox MA, Intoy J, Victor J, Yang B, Zhao Z, Rucci M.  2023.  Poster Session: Spatial-frequency-selective enhancement of visual sensitivity from saccade dynamics.. J Vis. 23(11):58.
Dhawka L, Palfini V, Hambright E, Blanco I, Poon C, Kahl A, Resch U, Bhawal R, Benakis C, Balachandran V et al..  2023.  Post-ischemic ubiquitination at the postsynaptic density reversibly influences the activity of ischemia-relevant kinases.. bioRxiv.
Yang J, Weimer RM, Kallop D, Olsen O, Wu Z, Renier N, Uryu K, Tessier-Lavigne M.  2023.  Regulation of Axon Degeneration after Injury and in Development by the Endogenous Calpain Inhibitor Calpastatin.. Neuron. 111(22):3698.
Chlebowicz J, Russ W, Chen D, Vega A, Vernino S, White CL, Rizo J, Joachimiak LA, Diamond MI.  2023.  Saturation mutagenesis of α-synuclein reveals monomer fold that modulates aggregation.. Sci Adv. 9(43):eadh3457.
Chlebowicz J, Russ W, Chen D, Vega A, Vernino S, White CL, Rizo J, Joachimiak LA, Diamond MI.  2023.  Saturation mutagenesis of α-synuclein reveals monomer fold that modulates aggregation.. Sci Adv. 9(43):eadh3457.
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJune, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K et al..  2023.  Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy.. bioRxiv.
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJune, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K et al..  2023.  Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy.. bioRxiv.
Eruysal E, Ravdin L, Zhang C, Kamel H, Iadecola C, Ishii M.  2023.  Sexually Dimorphic Association of Circulating Plasminogen Activator Inhibitor-1 Levels and Body Mass Index with Cerebrospinal Fluid Biomarkers of Alzheimer's Pathology in Preclinical Alzheimer's Disease.. J Alzheimers Dis. 91(3):1073-1083.
Joglekar A, Hu W, Zhang B, Narykov O, Diekhans M, Balacco J, Ndhlovu LC, Milner TA, Fedrigo O, Jarvis ED et al..  2023.  Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development.. bioRxiv.
Sasset L, Chowdhury KH, Manzo OL, Rubinelli L, Konrad C, J Maschek A, Manfredi G, Holland WL, Di Lorenzo A.  2023.  Sphingosine-1-phosphate controls endothelial sphingolipid homeostasis via ORMDL.. EMBO Rep. 24(1):e54689.
Chiu Y-T, Deutch AY, Wang W, Schmitz GP, Huang KLu, D Kocak D, Llorach P, Bowyer K, Liu B, Sciaky N et al..  2023.  A suite of engineered mice for interrogating psychedelic drug actions.. bioRxiv.
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al..  2023.  Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. bioRxiv.
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al..  2023.  Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. bioRxiv.
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al..  2023.  Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. bioRxiv.
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al..  2023.  Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. bioRxiv.
Schiff ND, Giacino JT, Butson CR, Choi EYoung, Baker JL, O'Sullivan KP, Janson AP, Bergin M, Bronte-Stewart HM, Chua J et al..  2023.  Thalamic deep brain stimulation in traumatic brain injury: a phase 1, randomized feasibility study.. Nat Med.
Schiff ND, Giacino JT, Butson CR, Choi EYoung, Baker JL, O'Sullivan KP, Janson AP, Bergin M, Bronte-Stewart HM, Chua J et al..  2023.  Thalamic deep brain stimulation in traumatic brain injury: a phase 1, randomized feasibility study.. Nat Med.
Nair RSathish, Kumar S, Das S, Singh SKumar, Srivastava P, Sondarva G, Rao A, Sinha SC, Xiong R, Bloem L et al..  2023.  TrkA expression directs the anti-neoplastic activity of MLK3 inhibitors in triple-negative breast cancer.. Oncogene.
Nair RSathish, Kumar S, Das S, Singh SKumar, Srivastava P, Sondarva G, Rao A, Sinha SC, Xiong R, Bloem L et al..  2023.  TrkA expression directs the anti-neoplastic activity of MLK3 inhibitors in triple-negative breast cancer.. Oncogene.
Nair RSathish, Kumar S, Das S, Singh SKumar, Srivastava P, Sondarva G, Rao A, Sinha SC, Xiong R, Bloem L et al..  2023.  TrkA expression directs the anti-neoplastic activity of MLK3 inhibitors in triple-negative breast cancer.. Oncogene.
Ruiz-Uribe NE, Bracko O, Swallow M, Omurzakov A, Dash S, Uchida H, Xiang D, Haft-Javaherian M, Falkenhain K, Lamont ME et al..  2023.  Vascular oxidative stress causes neutrophil arrest in brain capillaries, leading to decreased cerebral blood flow and contributing to memory impairment in a mouse model of Alzheimer’s disease.. bioRxiv.