Publications

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2023

Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al.. 2023. Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. bioRxiv.

Bennett NK, Lee M, Orr AL, Nakamura K. 2023. Systems-level analyses dissociate genetic regulators of reactive oxygen species and energy production.. bioRxiv.

2022

Stein AN, Joglekar A, Poon C-L, Tilgner HU. 2022. ScisorWiz: Visualizing Differential Isoform Expression in Single-Cell Long-Read Data.. Bioinformatics.

Mikheenko A, Prjibelski AD, Joglekar A, Tilgner HU. 2022. Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns.. Genome Res. 32(4):726-737.

Dolgetta A, Johnson M, Fruitman K, Siegel L, Zhou Y, McEwen BS, Kreek MJeanne, Milner TA. 2022. Sex and chronic stress alter the distribution of glutamate receptors within rat hippocampal CA3 pyramidal cells following oxycodone conditioned place preference.. Neurobiol Stress. 17:100431.

Hardwick SA, Hu W, Joglekar A, Fan L, Collier PG, Foord C, Balacco J, Lanjewar S, Sampson MMcGuirk, Koopmans F et al.. 2022. Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue.. Nat Biotechnol.

Allen M, Huang BS, Notaras MJ, Lodhi A, Barrio-Alonso E, Lituma PJ, Wolujewicz P, Witztum J, Longo F, Chen M et al.. 2022. Spontaneous generation of ASD astrocytes.. Mol Psychiatry. 27(5):2369.

Hochrainer K, Yang W. 2022. Stroke Proteomics: From Discovery to Diagnostic and Therapeutic Applications.. Circ Res. 130(8):1145-1166.

Carnazza KE, Komer LE, Xie YXue, Pineda A, Briano JAntonio, Gao V, Na Y, Ramlall T, Buchman VL, Eliezer D et al.. 2022. Synaptic vesicle binding of α-synuclein is modulated by β- and γ-synucleins.. Cell Rep. 39(2):110675.

2021

Fels JA, Casalena GA, Manfredi G. 2021. Sex and oestrogen receptor β have modest effects on gene expression in the mouse brain posterior cortex.. Endocrinol Diabetes Metab. 4(1):e00191.

Lopez-Lee C, Kodama L, Gan L. 2021. Sex Differences in Neurodegeneration: The Role of the Immune System in Humans.. Biol Psychiatry.

Chalangal J, Mazid S, Windisch K, Milner TA. 2021. Sex differences in the rodent hippocampal opioid system following stress and oxycodone associated learning processes.. Pharmacol Biochem Behav. :173294.

Yang J, Ma Q, Dincheva I, Giza J, Jing D, Marinic T, Milner TA, Rajadhyaksha A, Lee FS, Hempstead BL. 2021. SorCS is highly expressed in the CA2 region of the hippocampus and is enriched in the postsynaptic region.. Mol Psychiatry. 26(3):721.

Brea D, Poon C, Benakis C, Lubitz G, Murphy M, Iadecola C, Anrather J. 2021. Stroke affects intestinal immune cell trafficking to the central nervous system.. Brain Behav Immun.

Aguiar-Pulido V, Wolujewicz P, Martinez-Fundichely A, Elhaik E, Thareja G, Aleem AAbdel, Chalhoub N, Cuykendall T, Al-Zamer J, Lei Y et al.. 2021. Systems biology analysis of human genomes points to key pathways conferring spina bifida risk.. Proc Natl Acad Sci U S A. 118(51)

2020

Contoreggi NH, Mazid S, Goldstein LB, Park J, Ovalles AC, Waters EM, Glass MJ, Milner TA. 2020. Sex and age influence gonadal steroid hormone receptor distributions relative to estrogen receptor β-containing neurons in the mouse hypothalamic paraventricular nucleus.. J Comp Neurol.

Rubin BR, Johnson MA, Berman JM, Goldstein E, Pertsovskaya V, Zhou Y, Contoreggi NH, Dyer AG, Gray JD, Waters EM et al.. 2020. Sex and chronic stress alter delta opioid receptor distribution within rat hippocampal CA1 pyramidal cells following behavioral challenges.. Neurobiol Stress. 13:100236.

Yang J, Ma Q, Dincheva I, Giza J, Jing D, Marinic T, Milner TA, Rajadhyaksha A, Lee FS, Hempstead BL. 2020. SorCS2 is required for social memory and trafficking of the NMDA receptor.. Mol Psychiatry.

Mostofi N, Zhao Z, Intoy J, Boi M, Victor JD, Rucci M. 2020. Spatiotemporal Content of Saccade Transients.. Curr Biol. 30(20):3999-4008.e2.

2019

Wolujewicz P, M Ross E. 2019. The search for genetic determinants of human neural tube defects.. Curr Opin Pediatr. 31(6):739-746.

Wolujewicz P, M Ross E. 2019. The search for genetic determinants of human neural tube defects.. Curr Opin Pediatr.

Rubin BR, Milner TA, Pickel VM, Coleman CG, Marques-Lopes J, Van Kempen TA, Kazim SFaraz, McEwen BS, Gray JD, Pereira AC. 2019. Sex and age differentially affect GABAergic neurons in the mouse prefrontal cortex and hippocampus following chronic intermittent hypoxia.. Exp Neurol. 325:113075.

Bellamy JR, Rubin BR, Zverovich A, Zhou Y, Contoreggi NH, Gray JD, McEwen BS, Kreek MJeanne, Milner TA. 2019. Sex and chronic stress differentially alter phosphorylated mu and delta opioid receptor levels in the rat hippocampus following oxycodone conditioned place preference.. Neurosci Lett. 713:134514.

Fels JA, Manfredi G. 2019. Sex Differences in Ischemia/Reperfusion Injury: The Role of Mitochondrial Permeability Transition.. Neurochem Res.

Randesi M, Contoreggi NH, Zhou Y, Reich B, Bellamy JR, Yu F, Gray JD, McEwen BS, Milner TA, Kreek MJeanne. 2019. Sex Differences in Neuroplasticity- and Stress-Related Gene Expression and Protein Levels in the Rat Hippocampus Following Oxycodone Conditioned Place Preference.. Neuroscience.