Publications

Found 191 results
Author Title Type [ Year(Desc)]
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2024
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al..  2024.  Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. Nat Methods. 21(7):1349-1363.
Gong B, Li D, Łabaj PP, Pan B, Novoradovskaya N, Thierry-Mieg D, Thierry-Mieg J, Chen G, Lucas ABergstrom, LoCoco JS et al..  2024.  Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing.. Sci Data. 11(1):892.
Lopez-Lee C, Kodama L, Fan L, Zhu D, Zhu J, Wong MYing, Ye P, Norman K, Foxe NR, Ijaz L et al..  2024.  Tlr7 drives sex differences in age- and Alzheimer's disease-related demyelination.. Science. 386(6725):eadk7844.
Schiff ND.  2024.  Toward an interventional science of recovery after coma.. Neuron. 112(10):1595-1610.
Qu W, Lam M, McInvale JJ, Mares JA, Kwon S, Humala N, Mahajan A, Nguyen T, Jakubiak KA, Mun J-Y et al..  2024.  Xenografted human iPSC-derived neurons with the familial Alzheimer's disease APPV717I mutation reveal dysregulated transcriptome signatures linked to synaptic function and implicate LINGO2 as a disease signaling mediator.. Acta Neuropathol. 147(1):107.
2025
Larrea D, Tamucci KA, Kabra K, Velasco KR, Yun TD, Pera M, Montesinos J, Agrawal RR, Paradas C, Smerdon JW et al..  2025.  Altered mitochondria-associated ER membrane (MAM) function shifts mitochondrial metabolism in amyotrophic lateral sclerosis (ALS).. Nat Commun. 16(1):379.
Martinez-Meza S, Premeaux TA, Cirigliano SM, Friday CM, Michael S, Mediouni S, Valente ST, Ndhlovu LC, Fine HA, O'Brien RLFurler et al..  2025.  Antiretroviral drug therapy does not reduce neuroinflammation in an HIV-1 infection brain organoid model.. J Neuroinflammation. 22(1):66.
Zheng H, Feng Y, Tang J, Yu F, Wang Z, Xu J, Hai C, Jiang M, Cheng Y, Shao Z et al..  2025.  Astrocyte-secreted cues promote neural maturation and augment activity in human forebrain organoids.. Nat Commun. 16(1):2845.
Wang S, Qi C, Rajpurohit C, Ghosh B, Xiong W, Wang B, Qi Y, Hwang SHee, Hammock BD, Li H et al..  2025.  Inhibition of soluble epoxide hydrolase confers neuroprotection and restores microglial homeostasis in a tauopathy mouse model.. Mol Neurodegener. 20(1):44.
Zhou H, Balint D, Shi Q, Vartanian T, Kriegel MA, Brito I.  2025.  Lupus and inflammatory bowel disease share a common set of microbiome features distinct from other autoimmune disorders.. Ann Rheum Dis. 84(1):93-105.
Pinskaya M, Jarroux J, Cipolla R, Morillon A.  2025.  Nascent and Mature RNA Profiling by Subcellular Fractionation in Human Cells.. Methods Mol Biol. 2863:283-296.
Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, J Bae A, Bodor AL et al..  2025.  NEURD offers automated proofreading and feature extraction for connectomics.. Nature. 640(8058):487-496.
Bruce SS, Pawar A, Liao V, Merkler AE, Liberman AL, Navi BB, Iadecola C, Kamel H, Zhang C, Murthy SB.  2025.  Nontraumatic Intracranial Hemorrhage and Risk of Incident Dementia in US Medicare Beneficiaries.. Stroke. 56(4):908-914.
Gerber LM, Shulman KS, Wright MS, Schiff ND, Fins JJ.  2025.  Qualitative Analysis of Symptoms from the Central Thalamic Deep Brain Stimulation Trial for Traumatic Brain Injury.. NeuroRehabilitation. 56(2):143-151.
Gao V, Chlebowicz J, Gaskin K, Briano JA, Komer LE, Pineda A, Jhalani S, Ahmad S, Uwaifo E, Black LS et al..  2025.  Synaptic vesicle-omics in mice captures signatures of aging and synucleinopathy.. Nat Commun. 16(1):4079.
Breves SL, Di Giammartino DCampigli, Nicholson J, Cirigliano S, Mahmood SRaza, Lee UJin, Martinez-Fundichely A, Jungverdorben J, Singhania R, Rajkumar S et al..  2025.  Three-dimensional regulatory hubs support oncogenic programs in glioblastoma.. Mol Cell. 85(7):1330-1348.e6.