Publications

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2024

Liu Y, Jiang S, Li Y, Zhao S, Yun Z, Zhao Z-H, Zhang L, Wang G, Chen X, Manubens-Gil L et al.. 2024. Neuronal diversity and stereotypy at multiple scales through whole brain morphometry.. Nat Commun. 15(1):10269.

Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu S-C, McKellar CE, Lin A, Costa M, Eichler K, Yin Y et al.. 2024. Neuronal wiring diagram of an adult brain.. Nature. 634(8032):124-138.

Popovych S, Macrina T, Kemnitz N, Castro M, Nehoran B, Jia Z, J Bae A, Mitchell E, Mu S, Trautman ET et al.. 2024. Petascale pipeline for precise alignment of images from serial section electron microscopy.. Nat Commun. 15(1):289.

Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al.. 2024. Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. Nat Methods. 21(7):1349-1363.

Lopez-Lee C, Kodama L, Fan L, Zhu D, Zhu J, Wong MYing, Ye P, Norman K, Foxe NR, Ijaz L et al.. 2024. Tlr7 drives sex differences in age- and Alzheimer's disease-related demyelination.. Science. 386(6725):eadk7844.

Uekawa K, Anfray A, Ahn SJi, Casey N, Seo J, Zhou P, Iadecola C, Park L. 2024. tPA supplementation preserves neurovascular and cognitive function in Tg2576 mice.. Alzheimers Dement. 20(7):4572-4582.

Qu W, Lam M, McInvale JJ, Mares JA, Kwon S, Humala N, Mahajan A, Nguyen T, Jakubiak KA, Mun J-Y et al.. 2024. Xenografted human iPSC-derived neurons with the familial Alzheimer's disease APPV717I mutation reveal dysregulated transcriptome signatures linked to synaptic function and implicate LINGO2 as a disease signaling mediator.. Acta Neuropathol. 147(1):107.

2025

Larrea D, Tamucci KA, Kabra K, Velasco KR, Yun TD, Pera M, Montesinos J, Agrawal RR, Paradas C, Smerdon JW et al.. 2025. Altered mitochondria-associated ER membrane (MAM) function shifts mitochondrial metabolism in amyotrophic lateral sclerosis (ALS).. Nat Commun. 16(1):379.

Gamlin CR, Schneider-Mizell CM, Mallory M, Elabbady L, Gouwens N, Williams G, Mukora A, Dalley R, Bodor AL, Brittain D et al.. 2025. Connectomics of predicted Sst transcriptomic types in mouse visual cortex.. Nature. 640(8058):497-505.

Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Chang A, Kunin AB, Tran D, Fu J et al.. 2025. Functional connectomics reveals general wiring rule in mouse visual cortex.. Nature. 640(8058):459-469.

Milicevic KD, Ivanova VO, Brazil TN, Varillas CA, Zhu YMD, Andjus PR, Antic SD. 2025. The Impact of Optical Undersampling on the Ca2+ Signal Resolution in Ca2+ Imaging of Spontaneous Neuronal Activity.. J Integr Neurosci. 24(1):26242.

Wang S, Qi C, Rajpurohit C, Ghosh B, Xiong W, Wang B, Qi Y, Hwang SHee, Hammock BD, Li H et al.. 2025. Inhibition of soluble epoxide hydrolase confers neuroprotection and restores microglial homeostasis in a tauopathy mouse model.. Mol Neurodegener. 20(1):44.

Gattuso HC, van Hassel KA, Freed JD, Nuñez KM, de la Rea B, May CE, Ermentrout B, Victor JD, Nagel KI. 2025. Inhibitory control explains locomotor statistics in walking Drosophila.. Proc Natl Acad Sci U S A. 122(16):e2407626122.

Schneider-Mizell CM, Bodor AL, Brittain D, Buchanan JA, Bumbarger DJ, Elabbady L, Gamlin C, Kapner D, Kinn S, Mahalingam G et al.. 2025. Inhibitory specificity from a connectomic census of mouse visual cortex.. Nature. 640(8058):448-458.

Ju H, Kim I-D, Pavlova I, Mu S, Park KWoo, Minkler J, Madkoor A, Wang W, Wang X, Wu Z et al.. 2025. Ischemic Conditioning Promotes Transneuronal Survival and Stroke Recovery via CD36-Mediated Efferocytosis.. Circ Res. 136(5):e34-e51.

Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, J Bae A, Bodor AL et al.. 2025. NEURD offers automated proofreading and feature extraction for connectomics.. Nature. 640(8058):487-496.

Elabbady L, Seshamani S, Mu S, Mahalingam G, Schneider-Mizell CM, Bodor AL, J Bae A, Brittain D, Buchanan JA, Bumbarger DJ et al.. 2025. Perisomatic ultrastructure efficiently classifies cells in mouse cortex.. Nature. 640(8058):478-486.

Blackmon TJ, MacMahon JA, Bernardino PN, Hogans RE, Cheng M-Y, Vu J, Lee RDiana, Saito NH, Grodzki ACristina, Bruun DA et al.. 2025. Spatiotemporal perturbations of the plasminogen activation system in a rat model of acute organophosphate intoxication.. Acta Neuropathol Commun. 13(1):62.

Gao V, Chlebowicz J, Gaskin K, Briano JA, Komer LE, Pineda A, Jhalani S, Ahmad S, Uwaifo E, Black LS et al.. 2025. Synaptic vesicle-omics in mice captures signatures of aging and synucleinopathy.. Nat Commun. 16(1):4079.

Vargas-Ortiz J, Lin L, Martinez VK, Liu R-J, Babij R, Duan ZRan S, Wacks S, Sun L, Wang A, Khan S et al.. 2025. Translaminar synchronous neuronal activity is required for columnar synaptic strengthening in the mouse neocortex.. Nat Commun. 16(1):1296.

Weis MA, Papadopoulos S, Hansel L, Lüddecke T, Celii B, Fahey PG, Wang EY, J Bae A, Bodor AL, Brittain D et al.. 2025. An unsupervised map of excitatory neuron dendritic morphology in the mouse visual cortex.. Nat Commun. 16(1):3361.

Cheng H, Miller D, Southwell N, Porcari P, Fischer JL, Taylor I, J Salbaum M, Kappen C, Hu F, Yang C et al.. 2025. Untargeted pixel-by-pixel metabolite ratio imaging as a novel tool for biomedical discovery in mass spectrometry imaging.. Elife. 13