Publications

Larrea D, Tamucci KA, Kabra K, Velasco KR, Yun TD, Pera M, Montesinos J, Agrawal RR, Paradas C, Smerdon JW et al..  2025.  Altered mitochondria-associated ER membrane (MAM) function shifts mitochondrial metabolism in amyotrophic lateral sclerosis (ALS).. Nat Commun. 16(1):379.

Larrea D, Tamucci KA, Kabra K, Velasco KR, Yun TD, Pera M, Montesinos J, Agrawal RR, Paradas C, Smerdon JW et al..  2025.  Altered mitochondria-associated ER membrane (MAM) function shifts mitochondrial metabolism in amyotrophic lateral sclerosis (ALS).. Nat Commun. 16(1):379.

Zheng H, Feng Y, Tang J, Yu F, Wang Z, Xu J, Hai C, Jiang M, Cheng Y, Shao Z et al..  2025.  Astrocyte-secreted cues promote neural maturation and augment activity in human forebrain organoids.. Nat Commun. 16(1):2845.

Gamlin CR, Schneider-Mizell CM, Mallory M, Elabbady L, Gouwens N, Williams G, Mukora A, Dalley R, Bodor AL, Brittain D et al..  2025.  Connectomics of predicted Sst transcriptomic types in mouse visual cortex.. Nature. 640(8058):497-505.

Gamlin CR, Schneider-Mizell CM, Mallory M, Elabbady L, Gouwens N, Williams G, Mukora A, Dalley R, Bodor AL, Brittain D et al..  2025.  Connectomics of predicted Sst transcriptomic types in mouse visual cortex.. Nature. 640(8058):497-505.

Arora J, Ossowski A, Patchell A, Jamison KW, Kuceyeski A, Singh J, Garetti J, Cappillo M, Hamill L, Blunt E et al..  2025.  Depression Symptoms Associated With Clinical Symptoms, Disability, and Functional Connectivity After Traumatic Brain Injury.. J Neuropsychiatry Clin Neurosci. :appineuropsych20240262.

Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Chang A, Kunin AB, Tran D, Fu J et al..  2025.  Functional connectomics reveals general wiring rule in mouse visual cortex.. Nature. 640(8058):459-469.

Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Chang A, Kunin AB, Tran D, Fu J et al..  2025.  Functional connectomics reveals general wiring rule in mouse visual cortex.. Nature. 640(8058):459-469.

Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Chang A, Kunin AB, Tran D, Fu J et al..  2025.  Functional connectomics reveals general wiring rule in mouse visual cortex.. Nature. 640(8058):459-469.

Schneider-Mizell CM, Bodor AL, Brittain D, Buchanan JA, Bumbarger DJ, Elabbady L, Gamlin C, Kapner D, Kinn S, Mahalingam G et al..  2025.  Inhibitory specificity from a connectomic census of mouse visual cortex.. Nature. 640(8058):448-458.

Ju H, Kim I-D, Pavlova I, Mu S, Park KWoo, Minkler J, Madkoor A, Wang W, Wang X, Wu Z et al..  2025.  Ischemic Conditioning Promotes Transneuronal Survival and Stroke Recovery via CD36-Mediated Efferocytosis.. Circ Res. 136(5):e34-e51.

Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, J Bae A, Bodor AL et al..  2025.  NEURD offers automated proofreading and feature extraction for connectomics.. Nature. 640(8058):487-496.

Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, J Bae A, Bodor AL et al..  2025.  NEURD offers automated proofreading and feature extraction for connectomics.. Nature. 640(8058):487-496.

Clelland CDudley, Fan L, Saloner R, Etchegaray JIker, Altobelli CRichard, Salomonsson S, Maltos AM, Sachdev A, Zhu J, Lee S-I et al..  2025.  Opposing role of phagocytic receptors MERTK and AXL in Progranulin deficient FTD.. Commun Biol. 8(1):971.

Elabbady L, Seshamani S, Mu S, Mahalingam G, Schneider-Mizell CM, Bodor AL, J Bae A, Brittain D, Buchanan JA, Bumbarger DJ et al..  2025.  Perisomatic ultrastructure efficiently classifies cells in mouse cortex.. Nature. 640(8058):478-486.

Elabbady L, Seshamani S, Mu S, Mahalingam G, Schneider-Mizell CM, Bodor AL, J Bae A, Brittain D, Buchanan JA, Bumbarger DJ et al..  2025.  Perisomatic ultrastructure efficiently classifies cells in mouse cortex.. Nature. 640(8058):478-486.

Marongiu R, Platholi J, Park L, Yu F, Sommer G, Woods C, Milner TA, Glass MJ.  2025.  Promotion of neuroinflammation in select hippocampal regions in a mouse model of perimenopausal Alzheimer's disease.. Front Mol Biosci. 12:1597130.

Naguib S, Lopez-Lee C, Torres ERuth, Lee S-I, Zhu J, Zhu D, Ye P, Norman K, Zhao M, Wong MYing et al..  2025.  The R136S mutation in the APOE3 gene confers resilience against tau pathology via inhibition of the cGAS-STING-IFN pathway.. Immunity.

Kohno S, Okahashi N, Wan Y, Yu H, Takegami Y, Linn P, Nagatani N, Kitajima S, Kawada T, Matsuda F et al..  2025.  RB1 controls differentiation through positive regulation of phosphoglycerate mutases.. Cell Death Dis. 16(1):559.

Weis MA, Papadopoulos S, Hansel L, Lüddecke T, Celii B, Fahey PG, Wang EY, J Bae A, Bodor AL, Brittain D et al..  2025.  An unsupervised map of excitatory neuron dendritic morphology in the mouse visual cortex.. Nat Commun. 16(1):3361.

Weis MA, Papadopoulos S, Hansel L, Lüddecke T, Celii B, Fahey PG, Wang EY, J Bae A, Bodor AL, Brittain D et al..  2025.  An unsupervised map of excitatory neuron dendritic morphology in the mouse visual cortex.. Nat Commun. 16(1):3361.

Cheng H, Miller D, Southwell N, Porcari P, Fischer JL, Taylor I, J Salbaum M, Kappen C, Hu F, Yang C et al..  2025.  Untargeted pixel-by-pixel metabolite ratio imaging as a novel tool for biomedical discovery in mass spectrometry imaging.. Elife. 13

Kloske CM, Belloy ME, Blue EE, Bowman GR, Carrillo MC, Chen X, Chiba-Falek O, Davis AA, Di Paolo G, Garretti F et al..  2024.  Advancements in APOE and dementia research: Highlights from the 2023 AAIC Advancements: APOE conference.. Alzheimers Dement.

Carling GK, Fan L, Foxe NR, Norman K, Wong MYing, Zhu D, Corona C, Razzoli A, Yu F, Yarahmady A et al..  2024.  Alzheimer's disease-linked risk alleles elevate microglial cGAS-associated senescence and neurodegeneration in a tauopathy model.. Neuron.

Carling GK, Fan L, Foxe NR, Norman K, Wong MYing, Zhu D, Corona C, Razzoli A, Yu F, Yarahmady A et al..  2024.  Alzheimer's disease-linked risk alleles elevate microglial cGAS-associated senescence and neurodegeneration in a tauopathy model.. Neuron.