Publications

Martinez-Meza S, Premeaux TA, Cirigliano SM, Friday CM, Michael S, Mediouni S, Valente ST, Ndhlovu LC, Fine HA, O'Brien RLFurler et al..  2025.  Antiretroviral drug therapy does not reduce neuroinflammation in an HIV-1 infection brain organoid model.. J Neuroinflammation. 22(1):66.

Arora J, Ossowski A, Patchell A, Jamison KW, Kuceyeski A, Singh J, Garetti J, Cappillo M, Hamill L, Blunt E et al..  2025.  Depression Symptoms Associated With Clinical Symptoms, Disability, and Functional Connectivity After Traumatic Brain Injury.. J Neuropsychiatry Clin Neurosci. :appineuropsych20240262.

Alkhoury L, O'Sullivan J, Scanavini G, Dou J, Arora J, Hamill L, Patchell A, Radanovic A, Watson WD, Lalor EC et al..  2025.  Leveraging meaning-induced neural dynamics to detect covert cognition via EEG during natural language listening-a case series.. Front Psychol. 16:1616963.

Barnett D, Zimmer TS, Booraem C, Palaguachi F, Meadows SM, Xiao H, Wong MYing, Luo W, Gan L, Chouchani ET et al..  2025.  Mitochondrial complex III-derived ROS amplify immunometabolic changes in astrocytes and promote dementia pathology.. Nat Metab. 7(11):2300-2323.

Barnett D, Zimmer TS, Booraem C, Palaguachi F, Meadows SM, Xiao H, Wong MYing, Luo W, Gan L, Chouchani ET et al..  2025.  Mitochondrial complex III-derived ROS amplify immunometabolic changes in astrocytes and promote dementia pathology.. Nat Metab. 7(11):2300-2323.

Zhou C, Hardin EJ, Zimmer TS, Jackvony S, Barnett D, Khobrekar N, Giacomelli E, Studer L, Orr AL, Orr AG.  2025.  Neuroimmune signaling mediates astrocytic nucleocytoplasmic disruptions and stress granule formation associated with TDP-43 pathology.. Neurobiol Dis. 211:106939.

Zhou C, Hardin EJ, Zimmer TS, Jackvony S, Barnett D, Khobrekar N, Giacomelli E, Studer L, Orr AL, Orr AG.  2025.  Neuroimmune signaling mediates astrocytic nucleocytoplasmic disruptions and stress granule formation associated with TDP-43 pathology.. Neurobiol Dis. 211:106939.

Kohno S, Okahashi N, Wan Y, Yu H, Takegami Y, Linn P, Nagatani N, Kitajima S, Kawada T, Matsuda F et al..  2025.  RB1 controls differentiation through positive regulation of phosphoglycerate mutases.. Cell Death Dis. 16(1):559.

Oláhová M, Guerra RM, Collier JJ, Heidler J, Thompson K, White CR, Castañeda-Tamez P, Cabrera-Orefice A, Lightowlers RN, Chrzanowska-Lightowlers ZMA et al..  2025.  RTN4IP1 is required for the final stages of mitochondrial complex I assembly and CoQ biosynthesis.. EMBO J.

Kloske CM, Belloy ME, Blue EE, Bowman GR, Carrillo MC, Chen X, Chiba-Falek O, Davis AA, Di Paolo G, Garretti F et al..  2024.  Advancements in APOE and dementia research: Highlights from the 2023 AAIC Advancements: APOE conference.. Alzheimers Dement.

Stojakovic A, Trushin S, Sheu A, Khalili L, Chang S-Y, Li X, Christensen T, Salisbury JL, Geroux RE, Gateno B et al..  2024.  Author Correction: Partial inhibition of mitochondrial complex I ameliorates Alzheimer's disease pathology and cognition in APP/PS1 female mice.. Commun Biol. 7(1):234.

Hergenreder E, Minotti AP, Zorina Y, Oberst P, Zhao Z, Munguba H, Calder EL, Baggiolini A, Walsh RM, Liston C et al..  2024.  Combined small-molecule treatment accelerates maturation of human pluripotent stem cell-derived neurons.. Nat Biotechnol.

Bozdemir T, Daloğlu AErman, Colak D, Gürkan N, Öngüt G, Mutlu D.  2024.  [Comparison of Cytomegalovirus Polymerase Chain Reaction Test Results Obtained with Fully Automated Systems: Roche Cobas 6800 and Qiagen NeuMoDx Experience].. Mikrobiyol Bul. 58(3):284-292.

Pilato SA, O'Connell FP, Victor JD, Di Lorenzo PM.  2024.  Electrophysiological responses to appetitive and consummatory behavior in the rostral nucleus tractus solitarius in awake, unrestrained rats.. bioRxiv.

Oostrom M, Muniak MA, West RMEichler, Akers S, Pande P, Obiri M, Wang W, Bowyer K, Wu Z, Bramer LM et al..  2024.  Fine-tuning TrailMap: The utility of transfer learning to improve the performance of deep learning in axon segmentation of light-sheet microscopy images.. PLoS One. 19(3):e0293856.

Oostrom M, Muniak MA, West RMEichler, Akers S, Pande P, Obiri M, Wang W, Bowyer K, Wu Z, Bramer LM et al..  2024.  Fine-tuning TrailMap: The utility of transfer learning to improve the performance of deep learning in axon segmentation of light-sheet microscopy images.. PLoS One. 19(3):e0293856.

Meadows SM, Palaguachi F, Jang MWendy, Licht-Murava A, Barnett D, Zimmer TS, Zhou C, McDonough SR, Orr AL, Orr AG.  2024.  Hippocampal astrocytes induce sex-dimorphic effects on memory.. Cell Rep. 43(6):114278.

Meadows SM, Palaguachi F, Jang MWendy, Licht-Murava A, Barnett D, Zimmer TS, Zhou C, McDonough SR, Orr AL, Orr AG.  2024.  Hippocampal astrocytes induce sex-dimorphic effects on memory.. Cell Rep. 43(6):114278.

O'Sullivan KP, Philip BJ, Baker JL, Rolston JD, Orazem ME, Otto KJ, Butson CR.  2024.  In vivo and in vitro electrochemical impedance spectroscopy of acute and chronic intracranial electrodes.. Data (Basel). 9(6)

O'Sullivan KP, Philip BJ, Baker JL, Rolston JD, Orazem ME, Otto KJ, Butson CR.  2024.  In vivo and in vitro electrochemical impedance spectroscopy of acute and chronic intracranial electrodes.. Data (Basel). 9(6)

O'Sullivan KP, Philip BJ, Baker JL, Rolston JD, Orazem ME, Otto KJ, Butson CR.  2024.  In vivo and in vitro electrochemical impedance spectroscopy of acute and chronic intracranial electrodes.. Data (Basel). 9(6)

Knepp B, Navi BB, Rodriguez F, DeAngelis LM, Elkind MSV, Iadecola C, Sherman CP, Tagawa ST, Saxena A, Ocean AJ et al..  2024.  Ischemic Stroke with Comorbid Cancer Has Specific miRNA-mRNA Networks in Blood That Vary by Ischemic Stroke Mechanism.. Ann Neurol. 96(3):565-581.

Kudo R, Safonov A, Jones C, Moiso E, Dry JR, Shao H, Nag S, da Silva EM, Yildirim SYeni, Li Q et al..  2024.  Long-term breast cancer response to CDK4/6 inhibition defined by TP53-mediated geroconversion.. Cancer Cell. 42(11):1919-1935.e9.

Zheng X, Wu B, Liu Y, Simmons SK, Kim K, Clarke GS, Ashiq A, Park J, Li J, Wang Z et al..  2024.  Massively parallel in vivo Perturb-seq reveals cell-type-specific transcriptional networks in cortical development.. Cell.

Wuchty S, White AK, Olthof AM, Drake K, Hume AJ, Olejnik J, Aguiar-Pulido V, Mühlberger E, Kanadia RN.  2024.  Minor intron-containing genes as an ancient backbone for viral infection? PNAS Nexus. 3(1):pgad479.