Publications

Barbier M, Rajamani KThirtamara, Netser S, Wagner S, Harony-Nicolas H.  2025.  Altered Neural Activity in the Mesoaccumbens Pathway Underlies Impaired Social Reward Processing in Shank3-Deficient Rats.. Adv Sci (Weinh). :e2414813.

Zheng H, Feng Y, Tang J, Yu F, Wang Z, Xu J, Hai C, Jiang M, Cheng Y, Shao Z et al..  2025.  Astrocyte-secreted cues promote neural maturation and augment activity in human forebrain organoids.. Nat Commun. 16(1):2845.

Hu W, Foord C, Hsu J, Fan L, Corley MJ, Lanjewar SN, Xu S, Belchikov N, He Y, Pang APS et al..  2025.  Combined single-cell profiling of chromatin-transcriptome and splicing across brain cell types, regions and disease state.. Nat Biotechnol.

Hu W, Foord C, Hsu J, Fan L, Corley MJ, Lanjewar SN, Xu S, Belchikov N, He Y, Pang APS et al..  2025.  Combined single-cell profiling of chromatin-transcriptome and splicing across brain cell types, regions and disease state.. Nat Biotechnol.

Hu W, Foord C, Hsu J, Fan L, Corley MJ, Lanjewar SN, Xu S, Belchikov N, He Y, Pang APS et al..  2025.  Combined single-cell profiling of chromatin-transcriptome and splicing across brain cell types, regions and disease state.. Nat Biotechnol.

Gamlin CR, Schneider-Mizell CM, Mallory M, Elabbady L, Gouwens N, Williams G, Mukora A, Dalley R, Bodor AL, Brittain D et al..  2025.  Connectomics of predicted Sst transcriptomic types in mouse visual cortex.. Nature. 640(8058):497-505.

Arora J, Ossowski A, Patchell A, Jamison KW, Kuceyeski A, Singh J, Garetti J, Cappillo M, Hamill L, Blunt E et al..  2025.  Depression Symptoms Associated With Clinical Symptoms, Disability, and Functional Connectivity After Traumatic Brain Injury.. J Neuropsychiatry Clin Neurosci. :appineuropsych20240262.

Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Chang A, Kunin AB, Tran D, Fu J et al..  2025.  Functional connectomics reveals general wiring rule in mouse visual cortex.. Nature. 640(8058):459-469.

Wang S, Qi C, Rajpurohit C, Ghosh B, Xiong W, Wang B, Qi Y, Hwang SHee, Hammock BD, Li H et al..  2025.  Inhibition of soluble epoxide hydrolase confers neuroprotection and restores microglial homeostasis in a tauopathy mouse model.. Mol Neurodegener. 20(1):44.

Wang S, Qi C, Rajpurohit C, Ghosh B, Xiong W, Wang B, Qi Y, Hwang SHee, Hammock BD, Li H et al..  2025.  Inhibition of soluble epoxide hydrolase confers neuroprotection and restores microglial homeostasis in a tauopathy mouse model.. Mol Neurodegener. 20(1):44.

Schneider-Mizell CM, Bodor AL, Brittain D, Buchanan JA, Bumbarger DJ, Elabbady L, Gamlin C, Kapner D, Kinn S, Mahalingam G et al..  2025.  Inhibitory specificity from a connectomic census of mouse visual cortex.. Nature. 640(8058):448-458.

Hochrainer K, Hansen A, Garcia-Bonilla L.  2025.  Keep your guard up: blood-brain barrier protection by empagliflozin after acute ischaemic stroke.. Cardiovasc Res.

Hochrainer K, Hansen A, Garcia-Bonilla L.  2025.  Keep your guard up: blood-brain barrier protection by empagliflozin after acute ischaemic stroke.. Cardiovasc Res.

Alkhoury L, O'Sullivan J, Scanavini G, Dou J, Arora J, Hamill L, Patchell A, Radanovic A, Watson WD, Lalor EC et al..  2025.  Leveraging meaning-induced neural dynamics to detect covert cognition via EEG during natural language listening-a case series.. Front Psychol. 16:1616963.

Alkhoury L, O'Sullivan J, Scanavini G, Dou J, Arora J, Hamill L, Patchell A, Radanovic A, Watson WD, Lalor EC et al..  2025.  Leveraging meaning-induced neural dynamics to detect covert cognition via EEG during natural language listening-a case series.. Front Psychol. 16:1616963.

Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, J Bae A, Bodor AL et al..  2025.  NEURD offers automated proofreading and feature extraction for connectomics.. Nature. 640(8058):487-496.

Zhou C, Hardin EJ, Zimmer TS, Jackvony S, Barnett D, Khobrekar N, Giacomelli E, Studer L, Orr AL, Orr AG.  2025.  Neuroimmune signaling mediates astrocytic nucleocytoplasmic disruptions and stress granule formation associated with TDP-43 pathology.. Neurobiol Dis. 211:106939.

Elabbady L, Seshamani S, Mu S, Mahalingam G, Schneider-Mizell CM, Bodor AL, J Bae A, Brittain D, Buchanan JA, Bumbarger DJ et al..  2025.  Perisomatic ultrastructure efficiently classifies cells in mouse cortex.. Nature. 640(8058):478-486.

Oláhová M, Guerra RM, Collier JJ, Heidler J, Thompson K, White CR, Castañeda-Tamez P, Cabrera-Orefice A, Lightowlers RN, Chrzanowska-Lightowlers ZMA et al..  2025.  RTN4IP1 is required for the final stages of mitochondrial complex I assembly and CoQ biosynthesis.. EMBO J.

Belchikov N, Hu W, Fan L, Joglekar A, He Y, Foord C, Jarroux J, Hsu J, Pollard S, Amin S et al..  2025.  A single-cell, long-read, isoform-resolved case-control study of FTD reveals cell-type-specific and broad splicing dysregulation in human brain.. Cell Rep. 44(9):116198.

Belchikov N, Hu W, Fan L, Joglekar A, He Y, Foord C, Jarroux J, Hsu J, Pollard S, Amin S et al..  2025.  A single-cell, long-read, isoform-resolved case-control study of FTD reveals cell-type-specific and broad splicing dysregulation in human brain.. Cell Rep. 44(9):116198.

Belchikov N, Hu W, Fan L, Joglekar A, He Y, Foord C, Jarroux J, Hsu J, Pollard S, Amin S et al..  2025.  A single-cell, long-read, isoform-resolved case-control study of FTD reveals cell-type-specific and broad splicing dysregulation in human brain.. Cell Rep. 44(9):116198.

Foord C, Prjibelski AD, Hu W, Michielsen L, Vandelli A, Narykov O, Evans B, Hsu J, Belchikov N, Jarroux J et al..  2025.  A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types.. Nat Commun. 16(1):8093.

Foord C, Prjibelski AD, Hu W, Michielsen L, Vandelli A, Narykov O, Evans B, Hsu J, Belchikov N, Jarroux J et al..  2025.  A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types.. Nat Commun. 16(1):8093.

Foord C, Prjibelski AD, Hu W, Michielsen L, Vandelli A, Narykov O, Evans B, Hsu J, Belchikov N, Jarroux J et al..  2025.  A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types.. Nat Commun. 16(1):8093.