Publications

Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al..  2024.  Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. Nat Methods. 21(7):1349-1363.

Gong B, Li D, Łabaj PP, Pan B, Novoradovskaya N, Thierry-Mieg D, Thierry-Mieg J, Chen G, Lucas ABergstrom, LoCoco JS et al..  2024.  Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing.. Sci Data. 11(1):892.

Ke YD, van Hummel A, Au C, Chan G, Lee WSiang, van der Hoven J, Przybyla M, Deng Y, Sabale M, Morey N et al..  2024.  Targeting 14-3-3θ-mediated TDP-43 pathology in amyotrophic lateral sclerosis and frontotemporal dementia mice.. Neuron.

Cheng H, Miller D, Southwell N, Fischer JL, Taylor I, J Salbaum M, Kappen C, Hu F, Yang C, Gross SS et al..  2024.  Untargeted Pixel-by-Pixel Imaging of Metabolite Ratio Pairs as a Novel Tool for Biomedical Discovery in Mass Spectrometry Imaging.. bioRxiv.

Qu W, Lam M, McInvale JJ, Mares JA, Kwon S, Humala N, Mahajan A, Nguyen T, Jakubiak KA, Mun J-Y et al..  2024.  Xenografted human iPSC-derived neurons with the familial Alzheimer's disease APPV717I mutation reveal dysregulated transcriptome signatures linked to synaptic function and implicate LINGO2 as a disease signaling mediator.. Acta Neuropathol. 147(1):107.

Qu W, Lam M, McInvale JJ, Mares JA, Kwon S, Humala N, Mahajan A, Nguyen T, Jakubiak KA, Mun J-Y et al..  2024.  Xenografted human iPSC-derived neurons with the familial Alzheimer's disease APPV717I mutation reveal dysregulated transcriptome signatures linked to synaptic function and implicate LINGO2 as a disease signaling mediator.. Acta Neuropathol. 147(1):107.

Qu W, Lam M, McInvale JJ, Mares JA, Kwon S, Humala N, Mahajan A, Nguyen T, Jakubiak KA, Mun J-Y et al..  2024.  Xenografted human iPSC-derived neurons with the familial Alzheimer's disease APPV717I mutation reveal dysregulated transcriptome signatures linked to synaptic function and implicate LINGO2 as a disease signaling mediator.. Acta Neuropathol. 147(1):107.

Barbier M, Rajamani KThirtamara, Netser S, Wagner S, Harony-Nicolas H.  2025.  Altered Neural Activity in the Mesoaccumbens Pathway Underlies Impaired Social Reward Processing in Shank3-Deficient Rats.. Adv Sci (Weinh). :e2414813.

Zheng H, Feng Y, Tang J, Yu F, Wang Z, Xu J, Hai C, Jiang M, Cheng Y, Shao Z et al..  2025.  Astrocyte-secreted cues promote neural maturation and augment activity in human forebrain organoids.. Nat Commun. 16(1):2845.

Liao S-C, Kano K, Phanse S, Nguyen M, Margolis E, Fu YH, Meng JX, Moutaoufik MTaha, Chatterton Z, Saccon T et al..  2025.  CHCHD2 mutant mice link mitochondrial deficits to PD pathophysiology.. Sci Adv. 11(46):eadu0726.

Liao S-C, Kano K, Phanse S, Nguyen M, Margolis E, Fu YH, Meng JX, Moutaoufik MTaha, Chatterton Z, Saccon T et al..  2025.  CHCHD2 mutant mice link mitochondrial deficits to PD pathophysiology.. Sci Adv. 11(46):eadu0726.

Singh J, Chehayeb RJaber, Im Y, Yi I, Zarif TEl, Guajardo AFerrigno, VanOudenhove J, Halene S, Jha A, Kwan JM.  2025.  Clonal Hematopoiesis Risk Score (CHRS) Evaluation as a Prognostic Marker for Death in Cardio-Oncology Cohort.. JACC Adv. 4(12 Pt 2):102290.

Hu W, Foord C, Hsu J, Fan L, Corley MJ, Lanjewar SN, Xu S, Belchikov N, He Y, Pang APS et al..  2025.  Combined single-cell profiling of chromatin-transcriptome and splicing across brain cell types, regions and disease state.. Nat Biotechnol.

Hu W, Foord C, Hsu J, Fan L, Corley MJ, Lanjewar SN, Xu S, Belchikov N, He Y, Pang APS et al..  2025.  Combined single-cell profiling of chromatin-transcriptome and splicing across brain cell types, regions and disease state.. Nat Biotechnol.

Hu W, Foord C, Hsu J, Fan L, Corley MJ, Lanjewar SN, Xu S, Belchikov N, He Y, Pang APS et al..  2025.  Combined single-cell profiling of chromatin-transcriptome and splicing across brain cell types, regions and disease state.. Nat Biotechnol.

Gamlin CR, Schneider-Mizell CM, Mallory M, Elabbady L, Gouwens N, Williams G, Mukora A, Dalley R, Bodor AL, Brittain D et al..  2025.  Connectomics of predicted Sst transcriptomic types in mouse visual cortex.. Nature. 640(8058):497-505.

Louviot S, Radanovic A, Martin I, Patchell A, Alkhoury L, Scanavini G, Schiff ND, Hill NJeremy, Shah SA.  2025.  Cortical oscillatory dynamics underlying response speed: insights from high-density EEG and the attention network test.. Cereb Cortex. 35(12)

Chen H, Fan L, Guo Q, Wong MYing, Zhu J, Foxe N, Wang W, Nessim A, Carling G, Liu B et al..  2025.  DAP12 deletion reduces neuronal SLIT2 and demyelination and enhances brain resilience in female tauopathy mice.. Mol Neurodegener. 20(1):124.

Arora J, Ossowski A, Patchell A, Jamison KW, Kuceyeski A, Singh J, Garetti J, Cappillo M, Hamill L, Blunt E et al..  2025.  Depression Symptoms Associated With Clinical Symptoms, Disability, and Functional Connectivity After Traumatic Brain Injury.. J Neuropsychiatry Clin Neurosci. :appineuropsych20240262.

Sommer G, Hussein SOmar, Milner TA, Glass MJ.  2025.  Differing ionotropic glutamate receptor gene expression in paraventricular hypothalamic nucleus subregions following angiotensin II hypertension in male mice and female mice with advanced ovarian failure.. Neuroendocrinology. :1-36.

Patra S, Namballa HK, Gudipally AR, Xie L, Xie L, Harding WW.  2025.  Discovery of a selective α2C-AR scaffold from a molecular hybridization approach.. Bioorg Med Chem. 131:118424.

Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Chang A, Kunin AB, Tran D, Fu J et al..  2025.  Functional connectomics reveals general wiring rule in mouse visual cortex.. Nature. 640(8058):459-469.

Wang S, Qi C, Rajpurohit C, Ghosh B, Xiong W, Wang B, Qi Y, Hwang SHee, Hammock BD, Li H et al..  2025.  Inhibition of soluble epoxide hydrolase confers neuroprotection and restores microglial homeostasis in a tauopathy mouse model.. Mol Neurodegener. 20(1):44.

Wang S, Qi C, Rajpurohit C, Ghosh B, Xiong W, Wang B, Qi Y, Hwang SHee, Hammock BD, Li H et al..  2025.  Inhibition of soluble epoxide hydrolase confers neuroprotection and restores microglial homeostasis in a tauopathy mouse model.. Mol Neurodegener. 20(1):44.

Schneider-Mizell CM, Bodor AL, Brittain D, Buchanan JA, Bumbarger DJ, Elabbady L, Gamlin C, Kapner D, Kinn S, Mahalingam G et al..  2025.  Inhibitory specificity from a connectomic census of mouse visual cortex.. Nature. 640(8058):448-458.