Feil Family Brain & Mind Research Institute

Publications

Found 9 results
Author Title [ Type(Asc)] Year
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Journal Article
Foord C, Hsu J, Jarroux J, Hu W, Belchikov N, Pollard S, He Y, Joglekar A, Tilgner HU.  2023.  The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing. Nat Methods. 20(1):20-24.
Hardwick SA, Hu W, Joglekar A, Fan L, Collier PG, Foord C, Balacco J, Lanjewar S, Sampson MMcGuirk, Koopmans F et al..  2022.  Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue.. Nat Biotechnol.
Joglekar A, Hu W, Zhang B, Narykov O, Diekhans M, Balacco J, Ndhlovu LC, Milner TA, Fedrigo O, Jarvis ED et al..  2023.  Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development.. bioRxiv.
Gupta I, Collier PG, Haase B, Mahfouz A, Joglekar A, Floyd T, Koopmans F, Barres B, Smit AB, Sloan SA et al..  2018.  Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells.. Nat Biotechnol.
Mikheenko A, Prjibelski AD, Joglekar A, Tilgner HU.  2022.  Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns.. Genome Res. 32(4):726-737.
Stein AN, Joglekar A, Poon C-L, Tilgner HU.  2022.  ScisorWiz: Visualizing Differential Isoform Expression in Single-Cell Long-Read Data.. Bioinformatics.
Biegler MT, Fedrigo O, Collier P, Mountcastle J, Haase B, Tilgner HU, Jarvis ED.  2022.  Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9.. Sci Rep. 12(1):4369.
Hardwick SA, Joglekar A, Flicek P, Frankish A, Tilgner HU.  2019.  Getting the Entire Message: Progress in Isoform Sequencing.. Front Genet. 10:709.
Prjibelski AD, Mikheenko A, Joglekar A, Smetanin A, Jarroux J, Lapidus AL, Tilgner HU.  2023.  Accurate isoform discovery with IsoQuant using long reads.. Nat Biotechnol.