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Found 33 results
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Mason, Christopher E
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Journal Article
Krusche P
,
Trigg L
,
Boutros PC
,
Mason CE
,
De La Vega FM
,
Moore BL
,
Gonzalez-Porta M
,
Eberle MA
,
Tezak Z
,
Lababidi S
et al.
. 2019.
Author Correction: Best practices for benchmarking germline small-variant calls in human genomes.
.
Nat Biotechnol.
Krusche P
,
Trigg L
,
Boutros PC
,
Mason CE
,
De La Vega FM
,
Moore BL
,
Gonzalez-Porta M
,
Eberle MA
,
Tezak Z
,
Lababidi S
et al.
. 2019.
Best practices for benchmarking germline small-variant calls in human genomes.
.
Nat Biotechnol.
Shamarina D
,
Stoyantcheva I
,
Mason CE
,
Bibby K
,
Elhaik E
. 2017.
Communicating the promise, risks, and ethics of large-scale, open space microbiome and metagenome research.
.
Microbiome. 5(1):132.
Maduro V
,
Pusey BN
,
Cherukuri PF
,
Atkins P
,
Souich Cdu
,
Rupps R
,
Limbos M
,
Adams DR
,
Bhatt SS
,
Eydoux P
et al.
. 2016.
Complex translocation disrupting TCF4 and altering TCF4 isoform expression segregates as mild autosomal dominant intellectual disability.
.
Orphanet J Rare Dis. 11(1):62.
McIntyre ABR
,
Ounit R
,
Afshinnekoo E
,
Prill RJ
,
Hénaff E
,
Alexander N
,
Minot SS
,
Danko D
,
Foox J
,
Ahsanuddin S
et al.
. 2017.
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.
.
Genome Biol. 18(1):182.
McIntyre ABR
,
Ounit R
,
Afshinnekoo E
,
Prill RJ
,
Hénaff E
,
Alexander N
,
Minot SS
,
Danko D
,
Foox J
,
Ahsanuddin S
et al.
. 2019.
Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.
.
Genome Biol. 20(1):72.
Backlund PS
,
Urbanski HF
,
Doll MA
,
Hein DW
,
Bozinoski M
,
Mason CE
,
Coon SL
,
Klein DC
. 2017.
Daily Rhythm in Plasma N-acetyltryptamine.
.
J Biol Rhythms. 32(3):195-211.
Li S
,
Garrett-Bakelman FE
,
Chung SS
,
Sanders MA
,
Hricik T
,
Rapaport F
,
Patel J
,
Dillon R
,
Vijay P
,
Brown AL
et al.
. 2016.
Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia.
.
Nat Med. 22(7):792-9.
Lichinchi G
,
Gao S
,
Saletore Y
,
Gonzalez GMichelle
,
Bansal V
,
Wang Y
,
Mason CE
,
Rana TM
. 2016.
Dynamics of the human and viral m(6)A RNA methylomes during HIV-1 infection of T cells.
.
Nat Microbiol. 1:16011.
Goldman SL
,
Hassan C
,
Khunte M
,
Soldatenko A
,
Jong Y
,
Afshinnekoo E
,
Mason CE
. 2019.
Epigenetic Modifications in Acute Myeloid Leukemia: Prognosis, Treatment, and Heterogeneity.
.
Front Genet. 10:133.
Ma Y
,
Sannino D
,
Linden JR
,
Haigh S
,
Zhao B
,
Grigg JB
,
Zumbo P
,
Dündar F
,
Butler DJ
,
Profaci CP
et al.
. 2023.
Epsilon toxin-producing Clostridium perfringens colonize the MS gut and epsilon toxin overcomes immune privilege.
.
J Clin Invest.
Zook JM
,
Catoe D
,
McDaniel J
,
Vang L
,
Spies N
,
Sidow A
,
Weng Z
,
Liu Y
,
Mason CE
,
Alexander N
et al.
. 2016.
Extensive sequencing of seven human genomes to characterize benchmark reference materials.
.
Sci Data. 3:160025.
Rosenfeld JA
,
Reeves D
,
Brugler MR
,
Narechania A
,
Simon S
,
Durrett R
,
Foox J
,
Shianna K
,
Schatz MC
,
Gandara J
et al.
. 2016.
Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius.
.
Nat Commun. 7:10164.
M Ross E
,
Mason CE
,
Finnell RH
. 2017.
Genomic approaches to the assessment of human spina bifida risk.
.
Birth Defects Res. 109(2):120-128.
Afshinnekoo E
,
Ahsanuddin S
,
Mason CE
. 2016.
Globalizing and crowdsourcing biomedical research.
.
Br Med Bull. 120(1):27-33.
Goldman SL
,
MacKay M
,
Afshinnekoo E
,
Melnick AM
,
Wu S
,
Mason CE
. 2019.
The Impact of Heterogeneity on Single-Cell Sequencing.
.
Front Genet. 10:8.
Sudmant PH
,
Rausch T
,
Gardner EJ
,
Handsaker RE
,
Abyzov A
,
Huddleston J
,
Zhang Y
,
Ye K
,
Jun G
,
Fritz MHsi-Yang
et al.
. 2015.
An integrated map of structural variation in 2,504 human genomes.
.
Nature. 526(7571):75-81.
Jain D
,
M Puno R
,
Meydan C
,
Lailler N
,
Mason CE
,
Lima CD
,
Anderson KV
,
Keeney S
. 2018.
ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2.
.
Elife. 7
Yao Y
,
Norris EH
,
Mason CE
,
Strickland S
. 2016.
Laminin regulates PDGFRβ(+) cell stemness and muscle development.
.
Nat Commun. 7:11415.
Tessler M
,
Neumann JS
,
Afshinnekoo E
,
Pineda M
,
Hersch R
,
Velho LFelipe M
,
Segovia BT
,
Lansac-Toha FA
,
Lemke M
,
DeSalle R
et al.
. 2017.
Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing.
.
Sci Rep. 7(1):6589.
Agirre X
,
Meydan C
,
Jiang Y
,
Garate L
,
Doane AS
,
Li Z
,
Verma A
,
Paiva B
,
Martín-Subero JI
,
Elemento O
et al.
. 2019.
Long non-coding RNAs discriminate the stages and gene regulatory states of human humoral immune response.
.
Nat Commun. 10(1):821.
O'Hara NB
,
Reed HJ
,
Afshinnekoo E
,
Harvin D
,
Caplan N
,
Rosen G
,
Frye B
,
Woloszynek S
,
Ounit R
,
Levy S
et al.
. 2017.
Metagenomic characterization of ambulances across the USA.
.
Microbiome. 5(1):125.
Imam H
,
Khan M
,
Gokhale NS
,
McIntyre ABR
,
Kim G-W
,
Jang JYoung
,
Kim S-J
,
Mason CE
,
Horner SM
,
Siddiqui A
. 2018.
-methyladenosine modification of hepatitis B virus RNA differentially regulates the viral life cycle.
.
Proc Natl Acad Sci U S A.
Shaaban H
,
Westfall DA
,
Mohammad R
,
Danko D
,
Bezdan D
,
Afshinnekoo E
,
Segata N
,
Mason CE
. 2018.
The Microbe Directory: An annotated, searchable inventory of microbes' characteristics.
.
Gates Open Res. 2:3.
Singh NK
,
Bezdan D
,
Sielaff AChecinska
,
Wheeler K
,
Mason CE
,
Venkateswaran K
. 2018.
Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains.
.
BMC Microbiol. 18(1):175.
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